The Masaryk Institute and Archives of the CAS publishes three peer-reviewed periodicals:
- Studie o rukopisech [Manuscript Studies]
- Střed. Časopis pro mezioborová studia střední Evropy 19. a 20. století | Centre. Journal for Interdisciplinary Studies of Central Europe in the 19th and 20th Centuries
- Práce z dějin Akademie věd [Studies in the History of the Academy of Sciences]
The list below also includes periodicals whose publication has been discontinued or taken over by another publisher.